msmsTests - LC-MS/MS Differential Expression Tests
Statistical tests for label-free LC-MS/MS data by spectral counts, to discover differentially expressed proteins between two biological conditions. Three tests are available: Poisson GLM regression, quasi-likelihood GLM regression, and the negative binomial of the edgeR package.The three models admit blocking factors to control for nuissance variables.To assure a good level of reproducibility a post-test filter is available, where we may set the minimum effect size considered biologicaly relevant, and the minimum expression of the most abundant condition.
Last updated 4 months ago
immunooncologysoftwaremassspectrometryproteomics
1.58 score 136 dependencies 1 dependentsmsmsEDA - Exploratory Data Analysis of LC-MS/MS data by spectral counts
Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.
Last updated 4 months ago
immunooncologysoftwaremassspectrometryproteomics
1.31 score 132 dependencies 2 dependents